HsaEX0063546 @ hg38
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:158968671-159065971:+
Coord C1 exon
chr2:158968671-158968782
Coord A exon
chr2:159001080-159001189
Coord C2 exon
chr2:159065896-159065971
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTTGTTCCTTTAGGAG
3' ss Score
11.49
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCGCCTCGGGAGCCGGAGGAGAGGCAGCCGCGGAGCGCCGAGCTGGCCTCGCCCCGAGGCCCGGCCCTGGGTGTGGGGAACCGCGCTGAGGAGCTGGAAACTTTCCCGGCAG
Seq A exon
GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG
Seq C2 exon
AAACAAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-'1-15,'1-4,16-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.978
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGGTGTGGGGAAC
R:
GCTTCCTTCTTGCCTCCCTTT
Band lengths:
123-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development