RnoEX0088522 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45683993-45773514:+
Coord C1 exon
chr3:45683993-45684076
Coord A exon
chr3:45718577-45718683
Coord C2 exon
chr3:45773435-45773514
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCCTGTTCCTTGTAGGAG
3' ss Score
9.24
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCCGCCGAGTGCCCAGCCCGCCGCGCTCTGAGGCCCGGCCCCCGGGGTGGGAACCGCGCCGAAAGCTGGAAACTTTCCTGGCAG
Seq A exon
GAGCTGAGTGTTGGGCACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCTCTGTGAACGAGAAGATAACAGAGACAG
Seq C2 exon
AGACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'2-4,'2-1,11-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.905
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGCGCCGAAAGCTG
R:
CTGCTTCCTTCTTGCTTCCCT
Band lengths:
114-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]