HsaEX0063546 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:159825183-159922483:+
Coord C1 exon
chr2:159825183-159825294
Coord A exon
chr2:159857592-159857701
Coord C2 exon
chr2:159922408-159922483
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCTTGTTCCTTTAGGAG
3' ss Score
11.49
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCGCCTCGGGAGCCGGAGGAGAGGCAGCCGCGGAGCGCCGAGCTGGCCTCGCCCCGAGGCCCGGCCCTGGGTGTGGGGAACCGCGCTGAGGAGCTGGAAACTTTCCCGGCAG
Seq A exon
GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG
Seq C2 exon
AAACAAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-1/10=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.952
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGGTGTGGGGAAC
R:
GCTTCCTTCTTGCCTCCCTTT
Band lengths:
123-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)