MmuINT0029134 @ mm9
Intron Retention
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26213231-26214471:-
Coord C1 exon
chr2:26214334-26214471
Coord A exon
chr2:26213536-26214333
Coord C2 exon
chr2:26213231-26213535
Length
798 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TGACACCGCATGGTCCCCAGATG
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTGTGCTCCTGGACATCCTGCAGCGGACAGGCCACAAGGGCTACGTGGCTTTCCTCGAGAGCCTGGAGCTCTACTACCCTCAGTTATACCGGAAAGTCACTGGCAAGGAGCCAGCACGCGTCTTCTCCATGATCATTG
Seq A exon
GTGAGAGGCACGGGTGTGGGTTGTTGCTGTGGGTGGACTCGGGTCCTGGCTTCTATGATGGCGTTGGAGTGACTAAGTGTGATAACAAGCCTTACGATGTAGATCAGGGTAGTGGTCCCTGATGATACTCACAGGCTCTAGGGGGCAGGGTCTTCCTGAATTGCTGAGCTCTTACTGGTCTCTAGAAGGGGAGCCCTTCTCTGCCTTTCCTACTCACAGCCTGGAAATTTCACTGAGAAGTAGTGACCCCTCTGAAGTGCCATTTCTGCAGGGCCCAGTTGTCAGCCAAGAGCAGAATCCTACAGTTCCCAGAGGGGACAGAGGTGTCCTCTCCTGATGGAAGAGCCACAACCCCATCAATTCTCATTCATCTCATAAAGAGCACTGTGAGATAAACAGGGCAGGGGCGATGGCACACACCTTTAGCCCTGGTAGTCTGGAGGCAGAGGCCAACAGATCTCTTGAGTGAGAGGCCAGACTGGACTACATAGCAAGACGTTGTCTCAAAAACCAGGGGCTAGGGGGAGAAGAGGGTCAACTGGAGTCTTCACCCAGGGCATGTGAGTGGCCCTGGGTGATGAGTCAGAATCTCAGTTCACCTGTGAGGGACAGCAAGGCCAACTGGGCCTACTGAGCACACTCAGTCTTGAGAGACCCATCCTACCAGTTTTCTCTGTGGGAGGCCAGGAATGCTCCCTCTGTCCCCCCTAGTCTTCAAATGCACACTTACGGACAAGGACCAGCACGGGGTCTGCAGGTGACAACCGCAGGCTCCATCTGACACCGCATGGTCCCCAG
Seq C2 exon
ATGCATCAGGGGAGTCTGGCCTGACGCAGCTGCTGATGACAGAGGTCATGAAGCTGCAGAAGAAGGTTCAGGACCTGACGGCCCTTCTGAGCTCCAAGGACGACTTCATCAAGGAGCTGAGGGTAAAGGACAGCCTACTGCGCAAGCACCAGGAGCGGGTGCAGCGGCTCAAGGAGGAGTGTGAGCTGAGCAGTGCGGAGCTGAAGCGCTGCAAGGACGAGAACTATGAGCTGGCCATGTGCCTGGCACATCTGAGTGAAGAGAAGGGCGCAGCACTCATGCGGAACCGTGACCTGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-Card9:NM_001037747:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061916=CARD=PD(40.2=74.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGGCTACGTGGCTTTC
R:
GCACATGGCCAGCTCATAGTT
Band lengths:
348-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: