GgaINT0125929 @ galGal3
Intron Retention
Gene
ENSGALG00000001889 | CARD9
Description
NA
Coordinates
chr17:8599461-8600037:+
Coord C1 exon
chr17:8599461-8599598
Coord A exon
chr17:8599599-8599711
Coord C2 exon
chr17:8599712-8600037
Length
113 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATG
5' ss Score
7.57
3' ss Seq
GATACTTGTCCACCCAACAGACA
3' ss Score
4.4
Exon sequences
Seq C1 exon
GTGTTCTTCTGGACATTCTACAGCGAACAGGGCGCAAGGGCTTTGAGGCATTCATGGAGAGTCTCGAGCTTTACTATCCACAACTGTATAAGAAAATAACTGGGAAGGAACCAAGCAGGGTTTTTTCTCTGATTATAG
Seq A exon
GTAATGTTTGAGTTCTGAAATAACACTTTTTAGTAATAAGTGGGTGGAGATCTTCGGGGCGGAGGGGGTGTTGTAGACAGGACAGCAGTTACTGATACTTGTCCACCCAACAG
Seq C2 exon
ACACAGCTGGGGAGTCAGGCCTGAGCCAGCTCCTGATGAATGAGATTACGAAGCTGCAGAGAACAGTGCAGGAGGAGCGACAGAAGGCCCAGGAGCTCACCGTGTGGCTGCACACCAAAGAGAACATGATCAGAGAGATGTGGGTGAGGGACAGCCTGCTCCGCAAGCACCAAGAGCGGGTGCAGAAGATGAGGGAGGAGAGGGACAGTCTAAGCAAGGAGCTGCGGAAGTGCAAGGATGAGAACTACAACCTGGCAATGAGCTATGCCAGACAGAGCGAGGAGAAGAGCAGTGCCCTCATGAAGAACAGGGACCTGCTCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001889:ENSGALT00000002925:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0061916=CARD=PD(40.2=74.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTTTGAGGCATTCATGG
R:
CTGTCCCTCACCCACATCTCT
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]