MmuEX0038420 @ mm9
Exon Skipping
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34646023-34652953:-
Coord C1 exon
chr2:34652891-34652953
Coord A exon
chr2:34650692-34650849
Coord C2 exon
chr2:34646023-34646175
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCATGCCTTCCCTTTGGCAGGTA
3' ss Score
8.47
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGCATCATGAAGCAGCTGCCCATCTTGGAGCCTGGAGACAAGCCCAGGAAAGCCACATGGTCT
Seq A exon
GTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTGG
Seq C2 exon
GAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.236 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
PF0764610=Kelch_2=PU(77.4=75.9)
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAAGCAGCTGCCCATC
R:
GGACTCATGACTTGCAGACAGT
Band lengths:
211-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: