DreEX0060379 @ danRer10
Exon Skipping
Gene
ENSDARG00000103899 | rabepk
Description
Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
Coordinates
chr5:2462607-2468764:-
Coord C1 exon
chr5:2468416-2468764
Coord A exon
chr5:2465823-2465995
Coord C2 exon
chr5:2462607-2462762
Length
173 bp
Sequences
Splice sites
3' ss Seq
TGGGTCTCTGTTCTGCACAGGTA
3' ss Score
8.64
5' ss Seq
TAGGTGCTG
5' ss Score
1.08
Exon sequences
Seq C1 exon
GGTTTTCTCTTCCTTCTTCTGTCAGTCAGTCGTTTCCATCATCGATCATATTAACATTTGTCGATAAAGGTAAATCCTGATCGTTATCGATCTGCTTTTGCACGAGATTTGTGGCGTGACGTCATATCTCACGCGTTTACCGTGTAGCTTTTACGCGCTTTAACGCCGTCCTGTCTTGGCAACGGAACCGGCGTCCCTGGAAACGGGCTCCGTGACACGAGTTGAGTGGAGTGTGTGTTTGTTTTTGAGAAAAGTTGTGATGTGTGTGTGTGTTTATAGAGTATAAACTGGTGTACATGGAGCTGATTCCTGTTCTGGAGCCCGAGCAGAAGCCGCAGAACAGACACTG
Seq A exon
GTATGTTCTGGAGCCCACAGGTGCAGCTCCTGGAGTCTCCGTAGGCCACACCTGCTCATTCCTGCCCGCTGCCCATCACCATGATGAAGATGGAGGAGGAAAGGGGAAGATTGTGATTGTCGGAGGAGCAAATCCCAGTGGAAGCTTCGCTGACTCCTACATCATCAATCTAG
Seq C2 exon
ATACTCATCAATGGGATCTTCCAGATTGGGAGGGTCTGCAGGCACGTTATGAACACTGCAGTTTCACTCCTGAAAGCGAGCCGCAAAGCCTCTGGGTGTTTGGAGGAGCAGAGAAGAGCACAAACCGCAACTGTGTTCAAGCGCTGCGCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103899_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.305 C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
PF0764610=Kelch_2=PU(85.2=78.0)
C2:
PF0764610=Kelch_2=PD(13.0=13.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAACGCCGTCCTGTCTTGG
R:
TTCATAACGTGCCTGCAGACC
Band lengths:
244-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]