BtaEX0029435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96092488-96104123:+
Coord C1 exon
chr11:96092488-96092666
Coord A exon
chr11:96094957-96095114
Coord C2 exon
chr11:96103971-96104123
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATATATCCTCCCTTTGGCAGGTA
3' ss Score
8.7
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GACATCATGAAGCAGCTGCCAGTCTTGGAGCCTGGAGACAAGCCCAGGAAAGAAACATGGTCTGTAAGGAAGGATTCAGACAGAGAAACACATGAGTTTTTGTTTCATTTATAAGTAGTTTACTAACATATTTGATCATCTATGAAAAACAGTAGAGATGAAACTGTCTGCAGTTTCTG
Seq A exon
GTACACCCTGACCCTGGTTGGAGACAGCCCCTGTGCACGGGTTGGTCACAGCTGCTCATATTTACCCCCTGTTGGTGATGCCGAGAGAGGGAAGGTCTTCATTGTTGGGGGAGCAGATCCAAACAGAAGCTTCTCAGATGTGCACACCATAGATCTGG
Seq C2 exon
GAACACACCAGTGGGATTTAGCCACCTCAGAGGGCCTCCTGCCCCGGTACGAGCACACCAGCTTCATTCCCTCCTGCACACCTCACAGCATCTGGGTGTTTGGAGGGGCCGACCAGTCAGGAAATCGAAACTGCCTGCAAGTTCTGAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.111 C2=0.173
Domain overlap (PFAM):
C1:
NA
A:
PF0764610=Kelch_2=PU(77.4=75.9)
C2:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAAGCAGCTGCCAGTC
R:
GGAGGGAATGAAGCTGGTGTG
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development