MmuINT0065778 @ mm9
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32542933-32543183:-
Coord C1 exon
chr2:32543122-32543183
Coord A exon
chr2:32543036-32543121
Coord C2 exon
chr2:32542933-32543035
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GACTTTCTTGTCTTTTTCAGAAA
3' ss Score
11.81
Exon sequences
Seq C1 exon
GTGGACCTGGCAGTGGTGGAGGTGGGCATTGGCGGGGCTTTTGACTGCACCAACATCATCAG
Seq A exon
GTAAGGTAGCCGCCGTGGCTGTGGAGTCACCCGGAGCCTGCGCAACGGCTCGGCACTGGGGAGCAGGACTTTCTTGTCTTTTTCAG
Seq C2 exon
AAAGCCAGTGGTGTGTGGAGTCTCCTCTCTTGGCATTGACCACACCAGTCTACTAGGAGATACAGTGGAGAAAATAGCATGGCAGAAAGGGGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-Fpgs:NM_010236:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(13.6=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGGCAGTGGTGGA
R:
TAAAGATGCCCCCTTTCTGCC
Band lengths:
161-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: