RnoINT0062280 @ rn6
Intron Retention
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11723073-11723327:-
Coord C1 exon
chr3:11723257-11723327
Coord A exon
chr3:11723176-11723256
Coord C2 exon
chr3:11723073-11723175
Length
81 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACCTTCTTGTCTTTTTCAGAAA
3' ss Score
12.12
Exon sequences
Seq C1 exon
TTCCTGCAGGTGGACCTGGCCGTGGTGGAAGTGGGCATTGGTGGGGCTTTTGACTGCACCAACATCATCAG
Seq A exon
GTGAGGCATCTGCTGTGTAGCAACCGGAAGCCTGAGCTGGTGTCTCAGCACTGTGGATCAGGACCTTCTTGTCTTTTTCAG
Seq C2 exon
AAAGCCAGTGGTGTGTGGAGTCTCCTCTCTTGGCATTGACCACACCAGTCTGCTAGGAGATACAGTGGAGAAAATAGCATGGCAGAAAGGGGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780:ENSRNOT00000070916:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGCCGTGGTGGAAG
R:
TAAAGATGCCCCCTTTCTGCC
Band lengths:
160-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]