GgaINT0124151 @ galGal4
Intron Retention
Gene
ENSGALG00000005051 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr17:4894362-4894601:-
Coord C1 exon
chr17:4894540-4894601
Coord A exon
chr17:4894465-4894539
Coord C2 exon
chr17:4894362-4894464
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCGCTCTGCTGCGTCCCCAGGGC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTGGACCTGGCGGTGGTGGAGGTGGGCATCGGTGGTGCCTTCGACTGCACCAACATCATCAG
Seq A exon
GTAGGAGCGGGTCGGGCTCTGCGCCTTCCGGCTGTGCCATCCCTGCGTCACCGCTGCGCTCTGCTGCGTCCCCAG
Seq C2 exon
GGCGCCCGTGGTGTGCGGCGTCTCCTCGTTGGGCATCGACCACACCAGCATCCTGGGGGACACGGTGGAGAAGATCGCTTGGCAGAAGGGGGGCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051:ENSGALT00000008101:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGCGGTGGTGGAG
R:
CCCCCTTCTGCCAAGCGAT
Band lengths:
151-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]