HsaINT0065772 @ hg19
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130569700-130569967:+
Coord C1 exon
chr9:130569700-130569761
Coord A exon
chr9:130569762-130569864
Coord C2 exon
chr9:130569865-130569967
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCTTTTCCTCCCCTGCAGGAA
3' ss Score
12
Exon sequences
Seq C1 exon
GTGGACCTGGCAGTGGTGGAGGTGGGCATTGGCGGGGCTTATGACTGCACCAACATCATCAG
Seq A exon
GTGAGCGCAGTTGCTTGGGACGAGGGGTGGCAGCCAGGAGCACAGCCTCACCTGCCGCCTGGTGGCTCAGGGCAGGGCCTCATGGCCTTTTCCTCCCCTGCAG
Seq C2 exon
GAAGCCTGTGGTGTGCGGAGTCTCCTCTCTTGGCATCGACCACACCAGCCTCCTGGGGGATACGGTGGAGAAGATCGCATGGCAGAAAGGGGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-FPGS:NM_001018078:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.2=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGGCAGTGGTGG
R:
TAAAGATGCCCCCTTTCTGCC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)