BtaINT0063753 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98503394-98503632:+
Coord C1 exon
chr11:98503394-98503455
Coord A exon
chr11:98503456-98503529
Coord C2 exon
chr11:98503530-98503632
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCCCTTTTGTTTCCCGCAGGAA
3' ss Score
12.2
Exon sequences
Seq C1 exon
GTAGACCTGGCAGTGTTGGAAGTAGGCATTGGCGGGGCTTACGACTGCACCAACATCATCAG
Seq A exon
GTGAGGCCGATGGCTTGGGGAGAGGGATGGCGGCCAGGAGCCCAGGGGCATCCTGGCCCTTTTGTTTCCCGCAG
Seq C2 exon
GAAGCCTGTGGTGTGTGGGATCACCTCTCTTGGCATCGACCACACTGGCCTTCTGGGGGACACGATGGAGAAGATCGCATGGCAGAAAGGGGGCATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994:ENSBTAT00000032762:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(9.7=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGGCAGTGTTGGAAGT
R:
AAAAATGCCCCCTTTCTGCCA
Band lengths:
160-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development