DreINT0069638 @ danRer10
Intron Retention
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6019774-6020434:+
Coord C1 exon
chr21:6019774-6019835
Coord A exon
chr21:6019836-6020331
Coord C2 exon
chr21:6020332-6020434
Length
496 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CTGTTCTTGTGTTTTGCTAGGCG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GTTGATTTGGCCGTTATTGAGGTCGGGATTGGTGGAGCGTACGACTGCACCAACATTATCAG
Seq A exon
GTATCACAGCATTATTTGAGCTTGAGAGTTTTTACTGTCCTCCTCTCATCTGCTTCGCTGTTCCGTGTCTAATTGTCTCTTTGTGCCGCTTCAGCCTAATGTGGCCTCCATTTCATCTCCATTCATCTGCCTTCATGCTTGAAGAGTTACACATTCCTCTCATATCAACCAATCATTGATCTGCATTCTTCATGAGCTCACTTAATCCCATCAGTCATGAACCAATCAGTGGTCTTTATTTTTAATTTATTTGTGTGATAATATACTGTGACAATATATTGATGATAAAACATAATATTTGAATCATGTAGTCAGGAATCATATCATTAGTTCAAGCATAACCGTGGAGCGTAATTCTGAATTTAAAATATGCAGACTCCTAATGGAGTAAGGCACTGTGTAAAATATCTACATTTATTTAAATCTGTACTAGAAATCATAGTTTAGTAATTAGTTACCTGATAGGTAATGTGTTGCTGTTCTTGTGTTTTGCTAG
Seq C2 exon
GCGTCCTTGGGTGTGCGGTATCTCGTCTTTAGGTATCGATCACACTAGCATTCTGGGAGACACCATTGAGAAAATCGCCTGGCAGAAAGGAGGGATTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809:ENSDART00000141607:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(9.4=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]