HsaINT0065772 @ hg38
Intron Retention
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127807421-127807688:+
Coord C1 exon
chr9:127807421-127807482
Coord A exon
chr9:127807483-127807585
Coord C2 exon
chr9:127807586-127807688
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCTTTTCCTCCCCTGCAGGAA
3' ss Score
12
Exon sequences
Seq C1 exon
GTGGACCTGGCAGTGGTGGAGGTGGGCATTGGCGGGGCTTATGACTGCACCAACATCATCAG
Seq A exon
GTGAGCGCAGTTGCTTGGGACGAGGGGTGGCAGCCAGGAGCACAGCCTCACCTGCCGCCTGGTGGCTCAGGGCAGGGCCTCATGGCCTTTTCCTCCCCTGCAG
Seq C2 exon
GAAGCCTGTGGTGTGCGGAGTCTCCTCTCTTGGCATCGACCACACCAGCCTCCTGGGGGATACGGTGGAGAAGATCGCATGGCAGAAAGGGGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877:ENST00000423577:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.2=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGGCAGTGGTGG
R:
TAAAGATGCCCCCTTTCTGCC
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development