MmuINT0065778 @ mm10
Intron Retention
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32687413-32687663:-
Coord C1 exon
chr2:32687602-32687663
Coord A exon
chr2:32687516-32687601
Coord C2 exon
chr2:32687413-32687515
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GACTTTCTTGTCTTTTTCAGAAA
3' ss Score
11.81
Exon sequences
Seq C1 exon
GTGGACCTGGCAGTGGTGGAGGTGGGCATTGGCGGGGCTTTTGACTGCACCAACATCATCAG
Seq A exon
GTAAGGTAGCCGCCGTGGCTGTGGAGTCACCCGGAGCCTGCGCAACGGCTCGGCACTGGGGAGCAGGACTTTCTTGTCTTTTTCAG
Seq C2 exon
AAAGCCAGTGGTGTGTGGAGTCTCCTCTCTTGGCATTGACCACACCAGTCTACTAGGAGATACAGTGGAGAAAATAGCATGGCAGAAAGGGGGCATCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566:ENSMUST00000028148:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(13.6=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGGCAGTGGTGGA
R:
TAAAGATGCCCCCTTTCTGCC
Band lengths:
161-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types