MmuEX0011325 @ mm9
Exon Skipping
Gene
ENSMUSG00000056486 | Chn1
Description
chimerin (chimaerin) 1 [Source:MGI Symbol;Acc:MGI:1915674]
Coordinates
chr2:73497737-73517960:-
Coord C1 exon
chr2:73517672-73517960
Coord A exon
chr2:73515817-73515894
Coord C2 exon
chr2:73497737-73497814
Length
78 bp
Sequences
Splice sites
3' ss Seq
TAGATTTATTTTATTTACAGGTG
3' ss Score
7.44
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATTTGGAAGTCAGACCAGAAACTTCAGGCTGTACTACGATGGAAAGCACTTTGTTGGGGAGAAACGCTTTGAGTCCATCCACGATCTGGTGACTGATGGCTTGATTACTCTCTATATTGAAACCAAGGCAGCAGAATACATTGCCAAGATGACGATAAACCCAATTTATGAGCACATAGGATACACAACCTTAAACAGAGAGCCAGCATACAAACAGCACATGGCAGTCCTGAAAGAGACACATGATGAGAAAGAGGCTACAGGCCAGGATGGGGTATCAGAGAAAAGG
Seq A exon
GTGTCATCCAACAAGACAGGGATGATGACCTATTCAACAGCTTGACACACTGATTCCCTGTCCCAGTGGGTGACATTT
Seq C2 exon
TTGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAATGAACAAATTCCAAAATATGAAAAGGTTCACAATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056486-'14-13,'14-10,15-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.286 C2=0.062
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(45.1=33.0),PF0231811=FYVE_2=PU(10.8=12.4)
A:
NO
C2:
PF0013017=C1_1=PU(5.7=3.6),PF0231811=FYVE_2=PU(23.2=26.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGATGACGATAAACCCA
R:
TCAGAGTTGCTCTTCTAACAAGTGA
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: