MmuINT0057744 @ mm9
Intron Retention
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24938448-24938899:+
Coord C1 exon
chr2:24938448-24938598
Coord A exon
chr2:24938599-24938739
Coord C2 exon
chr2:24938740-24938899
Length
141 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TCATGGTCCTTTCTGCCCAGCCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GACCTGGAATCTCTTCCTATACCTCTGACCCGACACAGGCTGGGGAAAGCCTGAAGAGCTGCCTGGAGGAGGCGCTGGCGTTGATCCCACAGGCCCAGCATCCAGAGACGCCCACATTCTTGGGGTCCACAGCAGGAATGAGGCTGCTCAG
Seq A exon
GTGACACAGTCACAGGCTGCATCTGTTAGGGTCACTCACAAAAGCCAGGCACCCTGGGTTGAACTAACTGCAGTAGAGATTGGGGTGAGGAACCAGAGGTTGGGACGAGGCTTTCCTCTGCTCATGGTCCTTTCTGCCCAG
Seq C2 exon
CCAGAAGAACAGCTCTCAGGCAAGAGACATCCTAGCTGCAGTCTCCCAGACACTAAGCAAGTCTCCTGTGGATTTTTGGGGTGCTAAGATCTTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACCATCAACTATGTCCTGGGAATGCTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813-Entpd8:NM_028093:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCTCTGACCCGACACAGG
R:
ACCAAAGGCACCTTCATCCTG
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: