DreINT0063288 @ danRer10
Intron Retention
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41050195-41050637:+
Coord C1 exon
chr6:41050195-41050345
Coord A exon
chr6:41050346-41050477
Coord C2 exon
chr6:41050478-41050637
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAAT
5' ss Score
0.76
3' ss Seq
CTGTATCATTGGTTTGACAGCTT
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTGATGGCATATCAAGCTATGTCCAGAACCCTGCAGGAGCGGGAGAAAGTCTGAAGAAATGCTTGGACATTGCTAAGGCAGCAATACCAACAGAACAGCAGAAGTCCACACCTGTGTACCTCGGTGCCACTGCTGGCATGCGGCTTCTAAA
Seq A exon
GTGAATATACCCTTGAATATCTTGCTGATTATTATGGAGGAATATTTGGCTGTACTCTTAGAAATTATCAGTGTAATGGATTACTTTGATGTTAATTTAAATGAATGATAACCTGTATCATTGGTTTGACAG
Seq C2 exon
CTTACAGAACCAAACTCAATCAGACAGCATCCTTGCAGAGGTCGCCAAAACAATTCAAACTTACCCATTTGATTTCCGAGGAGCCAGAATACTCACAGGGATGGAGGAGGGAGCTTATGGCTGGATCACCACCAACTACCTCTTGGAGAGCTTTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565:ENSDART00000011245:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(36.9=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATGTCCAGAACCCTGCA
R:
GCCATAAGCTCCCTCCTCCAT
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]