BtaINT0056485 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17121339-17124782:+
Coord C1 exon
chr26:17121339-17121489
Coord A exon
chr26:17121490-17124622
Coord C2 exon
chr26:17124623-17124782
Length
3133 bp
Sequences
Splice sites
5' ss Seq
CCGGTATAG
5' ss Score
5.26
3' ss Seq
AACCTCAGCTCTTTGTGCAGGAT
3' ss Score
4.09
Exon sequences
Seq C1 exon
GTCCCGGAATCTCAGGCTTTGCTAAAAAAGTAAATGAAATCAATGTTTATCTGACGGCATGCATGGAAAGAGCCCAGAAAGTGATTCCGTCAATCCAGCACATGGAAACACCTGTGTACCTGGGAGCCACGGCCGGCATGCGGTTGCTCCG
Seq A exon
GTATAGCAGCCTGTAGGGACTGAGAGCGGCTGGGAGCTGGGTTTGGTTGCACTAAAGCCTCTGAACTATGAGCAAATGCCACACTTCTTAACACAATTCTAGATATGCTAAACGTCTACCCCTTCCACCCCTAAGAAAGAAAATGTCAGTGAACAGATAATATTCCCAAAGTCTTTGTATGTATAATAATGGGAGTGTACATATGTAAAAAAAAAAAAAAGCCCTCGTGCTGATCTCCCCACAGGGAATTCAAGGAAGTGATGGCACAAAGAAAGATTGAGCCTGTATACTCTGATATTTGGGGTAACAGATTTAGCCATTCTATATCTGGGAGTAGGAGACCCAGAGGAGATCACAGATGTCCCAAGACACGAATTGTCACAGCACATCATTACTGGTCACCACTTAGTACCTATAGGCTTAATTTTTCATTGGTTTGTTCACTCATTCATTCAGTGTGTAGTGACAGCCTCCTCTGTCCCAGGACATAGGAGTAGACTATTCATCTCCCAAGATCCGAGTTTTGATACAGGGTGACCAATTCTTTGCTAGAGGAGTGCTCAGAGCTGCTACGGGAACATACCTGTCCCTGCCAAGGATGGGAGAAGATAAAGAAGACTCACCAGAGGAGGAGTACATGAACCAAATCATTGAGGGCTTGTTGGAGGTTGGGAGAAGGGCATCACAGGCCAAGTAGATGTTATGTATTCCATAACCTATGTTTGCTACTGCTACTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCAGAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGGGTCTGACTCTTAGCGGCCCCATGGGCTGCAGCCTATCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGGGGTGCCATTGCCTTCTCTGATAACCTATGTTTATTGGACACCTATTACATGTCAGGCACAAGTCCCTCCTTTACCTGGATCTTGTGTTCTAATCACTGTACCCAGGAGGGATATGTGAAAGACCAGGGCCTGTTCAGAGGACTATAGATGGTTCTGCACAAATGGAACACAGGGTACATAGGGCAAACATCAATAGTGACAATAATAGTGGTAGAAGCTTGTATTTGTTGGGCCCTTTCTATGTTCTCAGCACCATGTTTTAATCTCCATAACTCTACAAAGTAAGAGGTACCATTAGCTATTATTAACTACATTAAGAAAGCTGTGGTGTACAGATGTTAAAGAACTCACCAAAGGTCACACATCTGGCTAGTGGTAGAGCCCAGGTTCTGAGTGGGATTCCGAGAGGGCAAGGTTCAGAGTGCCTCGTGGGCCATGCCAAGGAGTTTGGAGTAATCTGGGAAATAATGGGAAGCCACGAAAGGATGCTACACAGCTGGTGACGCGGGTTGTTGTTCGGTTACCCAGTCGGGTCTGACTCTTTGCGACCCCATGGACTGTAGCAGGCCAGGCCTCCCTGACCTTCACCATCTCCCGGAGCTTGCCCAAATTCATTGTCATTGCATTGGTGATGCCGTCCAGTCATCTCATCCTCTGACACCCTCTTCTCCTTCTGCCCTCAATCTTTCCTAGTATCAGGGACTTTTCCAATGAGTAGTCTGTTAGCATCAGATGACCAAAATACTGGAGCTTCAGCTTCAGCGTCACTCCTTCCAGTGAATATTCAGAGTTTATCTCCCTTAAGTTTAACTGGCTTGGTCTCCTTGCTGTCCAAGGGACTTTCAGGACTCTGCTCCAGCACCACAGTTCAAAGGCATCAATTCTTTGGTTTTCTGTTTTCTTTGTGGGCCAACTCTCACAATCGTATGTGACCACTGGGAAAACCATGGCCTTGACTATACGGACCTTTGTCGGCAGAGTAATGTCTCTGCTTTTCAACACACATCTAGGTTTGTCATAGCTTTCCTACCAGGAAGCAAACGTCTTCTGATTTCATGGCTGCAGTCACCATCCACAGTGATTTTGAAGCCCAGGAAGAGGAAATCTGTCACTACTTCCACCCTTTCCCCCTTCTATTTGCCATGCAGTGTGCCATGCACATTGGTAGAGGTGGATTGGAAGGGAGGAAAACTAGAGATAAGGAGGCCAGTTGGTAGGGTATGGAAGGCATTCAACTGAGAGATTATGGAGTCTAATGCCAGTTGGAAGGCAGCATTTTCTGACCCAGAGACTCTCAGTATTTTATCACCTAGATCTTGGAAGGGCTTCCTAGGTGGTGCAGTGGTAAAAGAATCCATCTGCTAATGCAGGAGACACAAGGGACATGGGTTTGATCCCACATTGGGATGATCCCTTGGAGAAGGAAATGGCAACCCACTCCAGTATCCTAACCCGAAAAATCCCATGGACAGAGGAGTCTGGTGGACTACAGTCCATGGAGCCGCAAAGAGTCGGACACGGCTGAGCATGCAATCCTTGGTAAAAGCAGCTATAGTCCATCTTCATTATGACAACCCTGGAAGATTTCTTCTTTAGATCTCAAGATTTCAAACCCGAAAACCAAGGCACAATATGAGAAAGTTTTTTTTTAACCAGTCTGGCACCAACTGAGTTTGGGTATCTGTCTCGGACGTTTACCACCTGGAATTTACTAGAGCCCTAATTAAAAACCTCAAGGAGAGTCCTGAGGCTGTGTAAGCAGCTCAAAGCCTCCATTAATAGCTAATGTAGCACACCTCAGCTCTAGGTTTGGTGATCAAGCAATATCCAGCTACCACCATCACAGTAGTTAAAATTATTCTGATAATTTCCTGGAGCCAGGCAACAACAATGAAAATGGTCTTTTAAGAGGACCAACCTATGTATGGATTGAAAGAATTTGGATTTGGAGAGAGGGGGCCAAAAGAGGAGTTATGCCTCAGCCCAAGGGAGGGCTCATCAGACAGCCGTGTGTGGGGATCTCATGCATCTGCTTAGTCCATGAGTTTGTGGTTCAGCTTCTTCAGCTTCCTAGTAGAACAGGCTGGAAGCTCTGGCTGCAGTAGGTAGTTGTAGTTATTCAAACAAAACCAGTAACCTCAGCTCTTTGTGCAG
Seq C2 exon
GATGGAAAATAAACAGATGGCAGACAAGATCCTGGCTGCAGTTGCAAGCAGCATCAGCAAGTACCCCTTTGACTTCCAAGGTGCCAGAATCATCAGTGGCCAGGAGGAAGGTGCCTATGGCTGGATTACTGTCAACTATTTGCTGGGCAAATTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589:ENSBTAT00000047864:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]