GgaINT0043433 @ galGal4
Intron Retention
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21573500-21574634:+
Coord C1 exon
chr6:21573500-21573650
Coord A exon
chr6:21573651-21574474
Coord C2 exon
chr6:21574475-21574634
Length
824 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CCTTTCTTCCATTCATCCAGGTT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
Seq A exon
GTACCACAGTGCTCATCTCCTTCCCTTGCATCTTAGACCACCGCAGACACCAAGTGGTGTCTGTGCAGTGAAGTCACTGGAAATGCTACCAGCTGGTGCTCTGCCCAGACCTCCATCTCTCTGGACCCCTGATCTCCCCAGACTCTTTCCCCACTTGCCTGTCAGGTCTGTTTCCACCTGCTTCCCCCTTCCATCTTCTCCAGCACCCACGTGCAACGCAGACACCAGGAAGGATAGCCGTGCCCAAACTGGTACTTGGAGAAGTTGTTCAAACATCTGTCATAGTCTAGTAATAGATGTGACCCACAGTTTTTGTGCCCTGTCATGTTTTAACTCCCCACATACCTCGACTTGGCCTGAAACCACCAAAGCTAAGGTAACTATATAGTTCAAATTTATGATTTTTCTTGGGGTGACTCAGACCTGTTACCTGGCTGTATCAGCGAGCTAATTTCATCTGTTTTGCCTAGGGAAACTCCCTGGGGATACCAGAAGGCATGGAGCCCTTCTGAAATGCTGAAAAGTAAGAAGGATCTCCCTTGTGTCATCCTTACCAGGGAATGTGCTCTAGGAGAGCAGGGGAGCTCTGCTCCAGTTCCTGCTGTCAGCTGCAGTGTCTGCGTCAGGGCTGATAGCAGCTGTGCTGTCAAGGTGTGACTGAGTGACATGGCCAGTTACAGCTGGATGTACCCATGTAAAGGACTGTCACGTTACAACTGATGGTTGATGGGGGGTTGCAGCCTATCTATCTGCTCAGAGTGAAGCCCATAAGCTGCTGAGGGCTGTCAGCTGCAGTCACTCCATCCTTTCTTCCATTCATCCAG
Seq C2 exon
GTTGGAAAATAAAGATGCAGCTGAAAAAGTCTTGTCCTCAGTAGAGAAGACACTACGCTCAGCTCCCTTCAATTTCCAGGGCGCCAGAATCATCAGTGGTCAGGAAGAAGGAGCCTATGGATGGATCACCATTAACTACTTACTTGGTAATTTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078:ENSGALT00000011467:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGGATCTCAGGTTACT
R:
CTGCTTGAAATTACCAAGTAAGTAGT
Band lengths:
311-1135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]