HsaINT0056482 @ hg19
Intron Retention
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97602101-97604392:+
Coord C1 exon
chr10:97602101-97602251
Coord A exon
chr10:97602252-97604232
Coord C2 exon
chr10:97604233-97604392
Length
1981 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TCAGCTCTTCCTTTGTACAGGAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTCCTGGAATCTCAAAATTTGTTCAGAAAGTAAATGAAATAGGCATTTACCTGACTGATTGCATGGAAAGAGCTAGGGAAGTGATTCCAAGGTCCCAGCACCAAGAGACACCCGTTTACCTGGGAGCCACGGCAGGCATGCGGTTGCTCAG
Seq A exon
GTATAGCAGCATGTAGGGACCAAGAGTATCTGGGAGTTAGGCTTGGCAGTGAAAGAGCCTCTGAAGTTATGGGAAAGGGCCACACTCCCTAATACCCCAAGTTCTACACACCCAAGTCCATACTTAAGAAAGGATATTTTAGTAAGTGAATAAAATGTTCAAACTCTTAGTATATATAGGGGTAGGATTTTATGTATGTTAAAAAAAAAAGCCCCCTTGTGCATCTCCCTATGGGGGATTCAAAGGGGAAGGGGCACAGGGAGAGAAAGACTGGGCCCGTATACTCTGGGGTTTGGGGCTACAGATTTAACTATTCAATATCTGGGAGGAAGAGGATAAGAGGAGACTCATAGACATCCCAGGTCATAAATATTCACAACTAGCACATCTTTATATCACTTGATACCTGTGTGAATTATTTGTTCACTTGTTCATTCATTCAGCATATAGTGCCTGCTCTATCCAGAATATGAAAACTCAACCCTCAAGGAAATCAGTTTCAATGCAGGGTGATCAGTGTTTTAATAGAGGAGTGCTCAGAGCTGCTATGGGAGCACATTTGGCCCTGCCCAGGGTGAGAGGAGGTCAGGAAGACTTAGAGGAAGGGATGCCTGAACTGAATCATGAAAAATGAGTTGGAGGATCGGGGAACAGCTTTATCAGCAGAACAGACAGCATGCATTCAGTAACTGATGTTTATTCAGCACCTATTATATGTCAGGCACTGTTCTAAGTACTGAGGATACAACAGTGAACAGGACAAAGTCTCTGACTTCATGGAGCTTGTGTTCTACCGGATGTGCAAAGGTAGGGAAGTGTGAGAGGCATATTCAGAGGACTGTAAGTAGTTCTGCATAGATAGAAGATAGGTAAGTAGTGTAAAATAATAATGATAATAATAGTAGCAGCTCGTATTTATTGAGCCCGTCCTATGTTCTTAGCACTACGCTAAGCACTTAATTGCACTGTCATAACAACTCTATGAAATTAACAATTATTAACAAGATAAGGAAGCTGTGGCTTACAAATGTTAAGTAACTCACCCAAGGTCACACACCTGGGAAGTGGTGGAGCCAGGATTCTGAGTGGGATTCTGAAAAGGAAGGGTCCAGGTCACAAAGTGCCCTATGGGGCCATGCTAGGAAGTTTGGAGTTTATCTTAGAGATAGTAGGAAGCCATTAAAGGATGCTACACAACTGGTGACACTGGTAGAGAAGATGGATTGGAGGGGAGAAAAGCTGGGGATAAAAGGAAGGCAGTTAGTAGGTGTGGACGCCATTTAGATGAGAGATGACAGGGGCCTAATGCCAGCTGGAAGGTAGCATCCTCTCGCTCAGAGACTCCCAGTGTTGGGTAGCCTAGATCTTGGAAGCAATTGCATCCCATCTTCATTAAGACAACCCTGGAAGATTCCTTCTTTAGGTCTCAAGGTCTCAAACAGACCCAAGAACTGAGCTGTAATATGAGGAAGATTTTTCCCAGTCTGGCAGCAGAGGAGATTGGATATCTATTCCAGGTCATTTGCCACCTGGTTTCTACTAGAACCCTAATTAAAAACCTGGAGCAGAGTCTGGCCATGTAACCAGCTAGGAGCCACCCACAGTGGTTAATATAGCACACATCAGCTTCAGGTATGGTCATCAAACCATACCCAGCTATCACCACCACAGTAATTTTAAGAGCCTTTGATAACTTTTTGAGCCAGGGAACTTCAGAACAAAAGTGGTATTTTAAGGAAAACCAACCTATGAAAGGATTGGAAGGATGTGGATTTGGAGAGAGATGAACAAAATATTAATTCTGCCTCATCCAAAAAAGGGGTTTCTTGGACAGCTATGTGCGAAGATCCCCATCTCTTCATTTATTCCAGGGCATTATGGTTCACTTCTTAGTAGCACTGTGTGGATGCTGTAGCTGAAATGGGTAATGTAATATAATTATTAAAACAAAAATGATAACCTCAGCTCTTCCTTTGTACAG
Seq C2 exon
GATGGAAAGTGAAGAGTTGGCAGACAGGGTTCTGGATGTGGTGGAGAGGAGCCTCAGCAACTACCCCTTTGACTTCCAGGGTGCCAGGATCATTACTGGCCAAGAGGAAGGTGCCTATGGCTGGATTACTATCAACTATCTGCTGGGCAAATTCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-ENTPD1:NM_001776:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PU(15.6=98.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGAATCTCAAAATTTGTTCA
R:
TGACTGAATTTGCCCAGCAGA
Band lengths:
310-2291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)