GgaINT0124637 @ galGal3
Intron Retention
Gene
ENSGALG00000008932 | F1NV62_CHICK
Description
NA
Coordinates
chr17:1312593-1313643:-
Coord C1 exon
chr17:1313493-1313643
Coord A exon
chr17:1312753-1313492
Coord C2 exon
chr17:1312593-1312752
Length
740 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CGATTTGTCTGCTTCTGCAGGGA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GATCTGGCATCTCCAGCTACGCAGATGATCCCGCTGGAGCAGGTGCCATCCTGAAGCCCTGCCTGGACAAAGCCATGACAGTTATCCCTGTAGAGCAGCAGTGGCAGACACCCACCTACCTGGGGGCCACAGCGGGCATGCGGCTGCTGAG
Seq A exon
GTATGGGCACTGCCCTCACCACACATTTCAGCATCTTAGAAGGGGTGTGGGGCTGGGATCGGGGGCAGAGGGGGTGCTCTTTGAGCAGACCATGACAATGGGCTGAGCATCCATTTCTGTAGCCCGCTGGGGTTGACCAACATAGCCAGCTCAGTGCTCCATGAGGAAACCCCACAGCCAACACTGGTGCCTGCCTGGCAGTATCCTGGAGGAGGAATAACCTCCTTTACTAGACTTGAATTCATAGAATGGTTTGGGTTGGAAGGGATGTTATAGATCATAGAATCATAGAACAGCTTGGGTTGGAAGGAACCTTAAAGCCTATCCAGTTCCAACCCGCTGCCATAGGCACAGACACCTCTCACCAGATCAGGCTGCCCAGGGACCCATCCAGCCTGATCACGAACACTTCCAGGGATGGGGCATCCACAGTTCTAGGCAGCCTGTTACAGGGCCTCACCACCCTAATTGTGAAAAATTTCCTTTTATCCCATCTAAATCTCTCCTCTTTCAGTTTAAAACCATTGTCCCTTATCCTGTCACTACAGGTTCTAGTAAAACATCTTTCTCCATCTTTTTTATACTTTCTCTATATGATGAAAAGCAATGGATGGATGGGGTATATGCTGTCACTGTGTAGTCCCACCCCTTTGCAGATCACAGCCTTTTACTGTTAGCCTGCTCTGAAAGCTCCCCTGCAATTGCCTTTTCCACCACATGCGATTTGTCTGCTTCTGCAG
Seq C2 exon
GGAGCAGAACAGCACAAAAGCTGAGCAGGTCTTTGCTGAGGTCAGCAAGGCCATTCGTGAGTTCCCTGTGGACTTCCGCGGAGCTCAGATCCTCACCGGGAATGAGGAGGGCTCCTTCGGCTGGATCACCATCAACTACCTGCTGGAGACACTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014518:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCCAGCTACGCAGATG
R:
TGATAAGTGTCTCCAGCAGGT
Band lengths:
303-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]