MmuEX0016938 @ mm9
Exon Skipping
Gene
ENSMUSG00000036813 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:MGI Symbol;Acc:MGI:1919340]
Coordinates
chr2:24938448-24939254:+
Coord C1 exon
chr2:24938448-24938598
Coord A exon
chr2:24938740-24938899
Coord C2 exon
chr2:24939018-24939254
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCATGGTCCTTTCTGCCCAGCCA
3' ss Score
4.83
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GACCTGGAATCTCTTCCTATACCTCTGACCCGACACAGGCTGGGGAAAGCCTGAAGAGCTGCCTGGAGGAGGCGCTGGCGTTGATCCCACAGGCCCAGCATCCAGAGACGCCCACATTCTTGGGGTCCACAGCAGGAATGAGGCTGCTCAG
Seq A exon
CCAGAAGAACAGCTCTCAGGCAAGAGACATCCTAGCTGCAGTCTCCCAGACACTAAGCAAGTCTCCTGTGGATTTTTGGGGTGCTAAGATCTTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACCATCAACTATGTCCTGGGAATGCTCCTGAAG
Seq C2 exon
TATTCCTCTGGACAGTGGATCCTGCCTGAAGAGGGGATGCTAGTTGGTGCTCTGGACCTTGGTGGAGCCTCCACGCAGATCAGCTTCGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAAGTCACCTTCCGCCTGTACGGTGCCAACTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTGAACAGGCTCCTGGCTAAGCTGGCACAGGACAGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036813_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
PF0115012=GDA1_CD39=FE(12.3=100)
C2:
PF0115012=GDA1_CD39=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATTCTTGGGGTCCACAG
R:
AGGAGCCTGTTCAGGATCTGG
Band lengths:
252-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types