DreEX6023574 @ danRer10
Exon Skipping
Gene
ENSDARG00000005565 | entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
Coordinates
chr6:41050195-41054875:+
Coord C1 exon
chr6:41050195-41050345
Coord A exon
chr6:41050478-41050637
Coord C2 exon
chr6:41054645-41054875
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTGTATCATTGGTTTGACAGCTT
3' ss Score
6.27
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGATGGCATATCAAGCTATGTCCAGAACCCTGCAGGAGCGGGAGAAAGTCTGAAGAAATGCTTGGACATTGCTAAGGCAGCAATACCAACAGAACAGCAGAAGTCCACACCTGTGTACCTCGGTGCCACTGCTGGCATGCGGCTTCTAAA
Seq A exon
CTTACAGAACCAAACTCAATCAGACAGCATCCTTGCAGAGGTCGCCAAAACAATTCAAACTTACCCATTTGATTTCCGAGGAGCCAGAATACTCACAGGGATGGAGGAGGGAGCTTATGGCTGGATCACCACCAACTACCTCTTGGAGAGCTTTATTAAG
Seq C2 exon
CACACATTTGAGGGCTCCTGGATCCACCCTAAAGCCGGAAAGATCATTGGAGCTCTCGATCTCGGTGGTGCATCAACACAGATCTCCTTTACCCCAAAAGACCCAGTCAGAGACCCAAATTCAGCATTTAATCTCCAACTTTATGGGTATAAATATGAGTTGTACACTTACAGCTACTTGTGTTACGGCAAAGACCAGGCTTTGAAGAAACTCCAAGCCTACCTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005565-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.6=100)
A:
PF0115012=GDA1_CD39=FE(12.3=100)
C2:
PF0115012=GDA1_CD39=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATGTCCAGAACCCTGCA
R:
TCTGACTGGGTCTTTTGGGGT
Band lengths:
248-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]