BtaEX0012918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17121339-17125957:+
Coord C1 exon
chr26:17121339-17121489
Coord A exon
chr26:17124623-17124782
Coord C2 exon
chr26:17125718-17125957
Length
160 bp
Sequences
Splice sites
3' ss Seq
AACCTCAGCTCTTTGTGCAGGAT
3' ss Score
4.09
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTCCCGGAATCTCAGGCTTTGCTAAAAAAGTAAATGAAATCAATGTTTATCTGACGGCATGCATGGAAAGAGCCCAGAAAGTGATTCCGTCAATCCAGCACATGGAAACACCTGTGTACCTGGGAGCCACGGCCGGCATGCGGTTGCTCCG
Seq A exon
GATGGAAAATAAACAGATGGCAGACAAGATCCTGGCTGCAGTTGCAAGCAGCATCAGCAAGTACCCCTTTGACTTCCAAGGTGCCAGAATCATCAGTGGCCAGGAGGAAGGTGCCTATGGCTGGATTACTGTCAACTATTTGCTGGGCAAATTCACTCAG
Seq C2 exon
AAATTGAGTTGGTTTAACCTGAAGCCAAGCAAAGACGACACTCAGGAAACCTATGGAGCTTTAGACCTTGGGGGAGCCTCTACACAAATCACTTTTGTGCCCCAAAATGAAACGACCGAGTCTCCAAACAACAACCTGTACTTCCGCCTCTATGGCAAGAACTACAGTGTATACACACACAGCTTCCTGTGCTATGGGAAGGACCAAGCACTTTTGCAGAAACTGGCCCTGGGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
PF0115012=GDA1_CD39=FE(12.2=100)
C2:
PF0115012=GDA1_CD39=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGCATGCATGGAAAGAG
R:
AGAGGCGGAAGTACAGGTTGT
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development