DreEX6069979 @ danRer10
Exon Skipping
Gene
ENSDARG00000045066 | entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
Coordinates
chr12:30635739-30638143:-
Coord C1 exon
chr12:30637993-30638143
Coord A exon
chr12:30636062-30636221
Coord C2 exon
chr12:30635739-30635951
Length
160 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTTATTTTCTCAAGGAT
3' ss Score
6.14
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCAAAGGCATCTCCAGTTACTTCGATAAACCACATGGGGCTGGTGCATCTCTGGAGGAGTGCATGAAGGAGGCCAAGGAGAAAATACCTGCTCACAGACACAGCGAAACCCCTGTCTACCTGGGAGCCACGGCTGGCATGAGACTGCTCAA
Seq A exon
GATGGAGGATGAAATGGCCTCAGAAAAAGTGCTTACCTCCGTTGCACATTCACTGAAGACGTACCCCTTCTCCTATCAGGGAGCTCGTATCCTTTCAGGCCAAGAGGAGGGAGCTTTTGGGTGGATTACAGTCAACTACCTTAGTGAAAACTTGAGAAAG
Seq C2 exon
CCCGCAGGCACTCTTGGAGCTCTGGACCTTGGTGGAGCCTCTACTCAAATAACCTTCGTACCTCAGCAGATTATTGAATCATCTGACAATTCGATTGACTTCAGACTGTATGGAAATGATTATCATCTATACACCCACAGCTTTCTCTGCTATGGGAAGGACCAAGCTCTCAAGCTTGCTATGGCTGAGAAATTGCGCTCAACACCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045066-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.9=100)
A:
PF0115012=GDA1_CD39=FE(12.6=100)
C2:
PF0115012=GDA1_CD39=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCGAAACCCCTGTCTAC
R:
TGAGCGCAATTTCTCAGCCAT
Band lengths:
254-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]