MmuEX6032752 @ mm10
Exon Skipping
Gene
ENSMUSG00000048120 | Entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:MGI Symbol;Acc:MGI:102805]
Coordinates
chr19:40723087-40726258:+
Coord C1 exon
chr19:40723087-40723237
Coord A exon
chr19:40724925-40725084
Coord C2 exon
chr19:40726022-40726258
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCACCTCTTCTTTTGTGTAGAAT
3' ss Score
8.16
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCCTGGAATCTCAAAATATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACCAACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAG
Seq A exon
AATGGAAAGCGAACAATCGGCAGACGAGGTCCTGGCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCCAGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGGCAGATTCACTCAG
Seq C2 exon
GAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCTTTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAAACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAAGGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048120-'19-19,'19-15,24-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(46.0=96.7)
A:
PF0115012=GDA1_CD39=FE(12.3=100)
C2:
PF0115012=GDA1_CD39=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCTGTCTACCTGGGAGC
R:
CAGAGAGCCTGATCCTTCCCA
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types