GgaEX1022492 @ galGal4
Exon Skipping
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21573500-21575445:+
Coord C1 exon
chr6:21573500-21573650
Coord A exon
chr6:21574475-21574634
Coord C2 exon
chr6:21575209-21575445
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTCCATTCATCCAGGTT
3' ss Score
9.48
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
Seq A exon
GTTGGAAAATAAAGATGCAGCTGAAAAAGTCTTGTCCTCAGTAGAGAAGACACTACGCTCAGCTCCCTTCAATTTCCAGGGCGCCAGAATCATCAGTGGTCAGGAAGAAGGAGCCTATGGATGGATCACCATTAACTACTTACTTGGTAATTTCAAGCAG
Seq C2 exon
TCTGGCTGGAAAAAATTTCTACATTCCCTGAAATCCGTAAGTGAAACATCAGGAGCGTTAGACCTTGGAGGAGCCTCAACACAGATTACCTTTGTACCAGATGAAATCTCTTCTGAGTCGCCACAGAATTTGCTGTATTTCCGCCTCTATGGCAAGGATTACCGAGTGTACACACACAGCTTCCTTTGCTATGGGAAGGACCAGGCTCTGCAACAGAAACTGGCCAGGGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'13-15,'13-12,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.5=100)
A:
PF0115012=GDA1_CD39=FE(12.2=100)
C2:
PF0115012=GDA1_CD39=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGCAGCACCAAGAGACGC
R:
AGCAAAGGAAGCTGTGTGTGT
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]