RnoEX6015786 @ rn6
Exon Skipping
Gene
ENSRNOG00000009239 | Entpd8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RGD Symbol;Acc:1561793]
Coordinates
chr3:2291446-2292221:+
Coord C1 exon
chr3:2291446-2291596
Coord A exon
chr3:2291722-2291881
Coord C2 exon
chr3:2291994-2292221
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCGTGATCCTTTCTGCCCAGCCA
3' ss Score
4.03
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
Exon sequences
Seq C1 exon
GACCGGGAATCTCTTCCTACACCTCTGACCCGACACAGGCTGGGGAGAGCCTGAAGAGCTGCCTGCAGGAGGCGCTGGCACTGATCCCACAGACCCAGCATCCAGTGACGCCCACATTCCTGGGGGCCACAGCAGGAATGAGGCTGCTCAG
Seq A exon
CCAGAAGAACAGCTCTCAGGCTCAAGACATCCTAGCTGCAGTCTCCCAGACACTGAGCAGGGCTCCGGTGGACTTTTGGGGAGCCAGGATCCTGGCTGGGCAGGATGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGTCCTGGGAATGCTCCTGAAG
Seq C2 exon
TATTCGTCTGGACAATGGATCCTGCCTGAAGATGGGACGCTAGTTGGTGCTCTGGACCTTGGCGGGGCCTCCACGCAGATCAGCTTTGTGCCTCAGGGCCCCATCCTGGACCAGAGCACCCAGGTTACCTTCCGCCTGTACGGCGCCAATTACAGTGTCTACACTCACAGCTACCTCTGCTTTGGGCGGGACCAGATCCTAAGAAGGCTCCTGGCTGAACTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009239-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
PF0115012=GDA1_CD39=FE(12.4=100)
C2:
PF0115012=GDA1_CD39=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCCACAGACCCAGCATC
R:
CCCAAAGCAGAGGTAGCTGTG
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]