HsaEX6064298 @ hg19
Exon Skipping
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:24860]
Coordinates
chr9:140330973-140331761:-
Coord C1 exon
chr9:140331611-140331761
Coord A exon
chr9:140331321-140331480
Coord C2 exon
chr9:140330973-140331203
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTCCTCTGTGCCCAGCCG
3' ss Score
6.61
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
GGCCTGGAATCTCCTCCTACACTTCTAATGCTGCACAGGCTGGTGAGAGCCTGCAGGGCTGCTTGGAGGAGGCGCTGGTGCTGATCCCAGAGGCCCAGCATCGGAAAACACCCACGTTCCTGGGGGCCACGGCTGGCATGAGGTTGCTCAG
Seq A exon
CCGGAAGAACAGCTCTCAGGCCAGGGACATCTTTGCAGCAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
Seq C2 exon
TACTCCTTCACTGGAGAATGGATCCAGCCTCCGGAGGAGATGCTGGTGGGTGCCCTGGACATGGGAGGGGCCTCCACCCAGATCACGTTCGTGCCTGGGGGCCCCATCTTGGACAAGAGCACCCAGGCCGATTTTCGCCTCTACGGCTCCGACTACAGCGTCTACACTCACAGCTACCTGTGCTTTGGACGGGACCAGATGCTGAGCAGGCTCCTCGTGGGGCTGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.015 C2=0.032
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(15.5=100)
A:
PF0115012=GDA1_CD39=FE(16.4=100)
C2:
PF0115012=GDA1_CD39=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAATGCTGCACAGGCTGG
R:
GTGCTCTTGTCCAAGATGGGG
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)