MmuEX0038421 @ mm9
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37298799-37325096:+
Coord C1 exon
chr2:37298799-37298976
Coord A exon
chr2:37310348-37310447
Coord C2 exon
chr2:37324897-37325096
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTCATGTGCAAAAACT
3' ss Score
-5.04
5' ss Seq
TGAAGATTC
5' ss Score
-22.43
Exon sequences
Seq C1 exon
GTGGGCGGGGCGAGGCCAGGGAATCGGGCTGCGGAGGGTCGGCTTCGTGAGCTCTGCTGCTTGTGGTTCTTCGGTAGAAGGCGGGCCCGAGCTCTCTTCTTCGCGGCTGCAGTCACGAAGTGCTCCCGCTGACCGTTGCCTGCATGGGCCTGAGCAGCCTGTCTGCGAACAAGCCGTG
Seq A exon
ACTGGCCAAATATGAATGTGTGCAAGTCATGAACATGTTACTTTATAGAGTTTGGTCTGGATGTTTCCTTTCCCCATCTACATTTACCATAATACTCTGA
Seq C2 exon
GCATTAAAAAAATATTTAACCATTCATGAGTTGAGCCTCATTCTTGAGTTATGGATGACAAGGCCTCTGTTGGAAAAATCAGTGTCTCATCAGACTCAGTGTCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGGAGTGATGATGAGAAGACGGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'0-5,'0-4,3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTCTTCTTCGCGGC
R:
TGGTGTCTCATCTCCTTGCCT
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: