MmuEX0045153 @ mm9
Exon Skipping
Gene
ENSMUSG00000026811 | St6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:MGI Symbol;Acc:MGI:1355316]
Coordinates
chr2:32462481-32464836:+
Coord C1 exon
chr2:32462481-32462631
Coord A exon
chr2:32463562-32463616
Coord C2 exon
chr2:32464746-32464836
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTCCCATTTCACAGATG
3' ss Score
9.46
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AACGGGACTGCGAGCGCCGGCGCTAGGACCCGGCGGGCTGGAGCTGCGGCGGGGCCTGGGCGGCCAGAGCGGCGCGGACCCCGGTTCTCGGCTCCCGGCGCCATGTGACGGGGTGCGGGGGCCGCGGGGGGCCGGGCGCTCCCCGGCGGAG
Seq A exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq C2 exon
GTGTGACCCCACAACCCTGCCCCCCGGGCCACCTGCCGGACGCTGGCCTCTACCCTTCAGCAGACGCCGGAGAGAGATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026811-'1-13,'1-6,2-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.556 C2=0.509
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: