RnoEX0086484 @ rn6
Exon Skipping
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11628088-11633901:+
Coord C1 exon
chr3:11628088-11628636
Coord A exon
chr3:11629589-11629770
Coord C2 exon
chr3:11633722-11633901
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTCCCATTTCACAGATG
3' ss Score
9.46
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GTTTAGAGGCCTGCACCACCAGGCCCACCAAAAGCTATGTTTTGAAACCTTGCTCTCTCCATTTTCCGGAGGTAAGGACATGAAGTAAAGTACCAGGTTGGCCAGAGGGTAAATACTGGGTCAACGAGGCGGAAATCCAGGGAACGCATGGCCAGAGTTCGAGCCCAGTGATCTCCTCATCTCGGTTTCCCCATCCGAGATCCTGGTGTCCATTTGGAGGGAGAGAAATGGACCAGACTCGGGATTTGTAGGGGAGGATAGGTGCTGTTGGAGAGCATCTCTCCTCTCTGGCACCTCCTTAGGGCGGGCCCATCCGCAGCCGAAGGCTCCGCCCTCTCTCCCGGCCCTAAACCGGTCTGTGAGCGTCGGCGCTAGGACCCGGCGGGCCAGAGCTGCAGCGGGGCCTGGGCGGCCAGAGCAGCGCGGACCCCGGTTCTCGGCTCCCGGCGCCATGTGACGGGGTGCGGGGGCCGCGGGGGGCCGGGCGCTCCCCGGCGGAG
Seq A exon
ATGAGGAAACTGAGGCTCAGAGAGTCACATGGCTTGCTCGAGGCCCCCCAGCAGTAAGTGTGGACCCGACATTCGCACTGGCACCTGATATGCTGTTCTGACCATGGCGTTCTCAGAGCAGGACCGTGACGGGGCTGACCAGGGGGACCGTAGTCCTGGCTGAGGGCACTGCTCAGGCAAAG
Seq C2 exon
GAGCAGCGGTCAGCAGTGTTTGTGGTCCTCTTTGCTCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTACGGCTCCCTGCGGGGCCGCTCGCGGCGGCCAGTCAACCTCAAGAAGTGGAGTTTCTCCAACGCCTACTTCCCTATCCTCGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(16.1=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATCTCTCCTCTCTGGCA
R:
AGGACCACAAACACTGCTGAC
Band lengths:
257-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]