RnoEX0086485 @ rn6
Exon Skipping
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11628088-11633901:+
Coord C1 exon
chr3:11628088-11628636
Coord A exon
chr3:11630777-11630867
Coord C2 exon
chr3:11633722-11633901
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTTAGAGGCCTGCACCACCAGGCCCACCAAAAGCTATGTTTTGAAACCTTGCTCTCTCCATTTTCCGGAGGTAAGGACATGAAGTAAAGTACCAGGTTGGCCAGAGGGTAAATACTGGGTCAACGAGGCGGAAATCCAGGGAACGCATGGCCAGAGTTCGAGCCCAGTGATCTCCTCATCTCGGTTTCCCCATCCGAGATCCTGGTGTCCATTTGGAGGGAGAGAAATGGACCAGACTCGGGATTTGTAGGGGAGGATAGGTGCTGTTGGAGAGCATCTCTCCTCTCTGGCACCTCCTTAGGGCGGGCCCATCCGCAGCCGAAGGCTCCGCCCTCTCTCCCGGCCCTAAACCGGTCTGTGAGCGTCGGCGCTAGGACCCGGCGGGCCAGAGCTGCAGCGGGGCCTGGGCGGCCAGAGCAGCGCGGACCCCGGTTCTCGGCTCCCGGCGCCATGTGACGGGGTGCGGGGGCCGCGGGGGGCCGGGCGCTCCCCGGCGGAG
Seq A exon
GTGTGACCCCACAACCTTGCCCCCCGGGCCACCTGCAGGACGCTGGCCTCTACCCTTCAGCAGACGCCGCCGAGAGATGAGTAGCAACAAA
Seq C2 exon
GAGCAGCGGTCAGCAGTGTTTGTGGTCCTCTTTGCTCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAACGAGGTCTTCCACTACGGCTCCCTGCGGGGCCGCTCGCGGCGGCCAGTCAACCTCAAGAAGTGGAGTTTCTCCAACGCCTACTTCCCTATCCTCGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0077713=Glyco_transf_29=PU(16.1=73.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAAACCGGTCTGTGAGC
R:
GACCACAAACACTGCTGACCG
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]