HsaEX6063153 @ hg19
Exon Skipping
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:23364]
Coordinates
chr9:130656791-130660289:-
Coord C1 exon
chr9:130660235-130660289
Coord A exon
chr9:130658521-130658611
Coord C2 exon
chr9:130656791-130656970
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq A exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
Seq C2 exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCGCCGACCTGTCAACCTCAAGAAGTGGAGCATCACTGACGGCTATGTCCCCATTCTCGGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-'3-15,'3-13,8-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=0.806 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0077713=Glyco_transf_29=PU(23.7=70.0),PF155481=DUF4655=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGTCACATGGCTTGCTC
R:
CTTGAGGTTGACAGGTCGGC
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)