HsaEX0062046 @ hg19
Exon Skipping
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:23364]
Coordinates
chr9:130658521-130661932:-
Coord C1 exon
chr9:130661782-130661932
Coord A exon
chr9:130660235-130660289
Coord C2 exon
chr9:130658521-130658611
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTCCCATTTCACAGATG
3' ss Score
10.07
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGGCCGGGCCGTGACGGCGGCGCTAGGACCCGGCGGGCCGCGGGTGCGGCGAGGCCTGGGCGGCCTGAGGAGCGCGGACCCCGGCGCTCGGCTCCCGGCGCCATGTGAGGGGGCTCGGGGGCCGCGGGGGGCCGGGCGCTCCCCGCCGGAG
Seq A exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq C2 exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-'1-13,'1-9,3-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.778 C2=0.806
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGAGGGGGCTCGGG
R:
GCTACTCATTTCTCTCCGGCG
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)