HsaEX0062046 @ hg38
Exon Skipping
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr9:127896242-127899653:-
Coord C1 exon
chr9:127899503-127899653
Coord A exon
chr9:127897956-127898010
Coord C2 exon
chr9:127896242-127896332
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTCCCATTTCACAGATG
3' ss Score
10.07
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGGCCGGGCCGTGACGGCGGCGCTAGGACCCGGCGGGCCGCGGGTGCGGCGAGGCCTGGGCGGCCTGAGGAGCGCGGACCCCGGCGCTCGGCTCCCGGCGCCATGTGAGGGGGCTCGGGGGCCGCGGGGGGCCGGGCGCTCCCCGCCGGAG
Seq A exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq C2 exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-'2-13,'2-9,8-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.803 C2=0.789
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGAGGGGGCTCGGG
R:
GCTACTCATTTCTCTCCGGCG
Band lengths:
135-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development