HsaINT1043105 @ hg38
Intron Retention
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr9:127896242-127898010:-
Coord C1 exon
chr9:127897956-127898010
Coord A exon
chr9:127896333-127897955
Coord C2 exon
chr9:127896242-127896332
Length
1623 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq A exon
GTAAGTGGTGAAACCGGGATTCGCACTGGCAGCTGACATGCTGTACTGACCATGGCCTTCTCAGAGCAGGATTGTGACGGGGCGGACCAGGGGGACGGTGGTCCTGGCTGAGGGCACAGCTCGGGCAAAGGTGGGAAAGTGGGCGGCGGGCAGGGGGCATCCGCAGGAAAGGGTGGCCACGCGTAGTAAGATATAGGCGGCTGGACCCCTGGGCGCCTTGAATGCCAAGGTCTCAGGGCAGATGGGGCCACCCCAGGATTCTGGACTCCTGTCTTTTGCTCTAACGGTCTGTGAGGGCAAGAACAAGCCGCTCCCTGCTTCTGATGAGGCCCCGTTTTCTGCTCTGTACCGCAGGGCCTGGACTAGATAGGAGTCTGGGCCTCCCTGACTGGCAGTGAGGGGCAGCCGCTGGAGAAACCCGAAGCCGAGCTCCGGATGAGGGGCGCTCCCACGGGGAGGGGGCGGGGTTGGAGAGGGGGCGGGGCCATGATCTAACCAATCAGGAGCGAGGTGTGTGTGCCAAGCCTCCTCTGGCCCGAGGTTCTCTGGCTATTCCTGGTGGCCGTGTAGGAGTAAACAGCGGCTAGGTCAAAGGGCTCAGAGAATACAGGAACTGAGAGGCCCCTGGAGCAGGGGACGGAGCTGAGGAGGGCCCCCTAAGCCCCAGTTTCTTCCCTCTGCACTCCTGCCCGCCCTGCCCCCGGCCTGTCTGCTGGAGGTAGGCTGGACACAGTACATTTTCCCTTTCACAGGTGGGGAACCCTGGAAAGGAGCTGGGTTTTGGTTGTGGGAGAGGAAGAGATTGGGGTGTGCGGAGCAGAGCTGGGCCGGCCTCCTCACTGCCAGGTCTTCCAAAGGCCCCCCCAGCCACCCCCTGAGACTGTGATTACAGCCATTTGACAGATGAGGAGTCAGCCCTGGCAGAGACTGTCGAGCCTGGACTAGAACCGAGCCTCTCAGACTTGAGTCTGTGCCCTTAGCCCCCGAGAGATCCTGCTTGTTAATGCACTAATTCATTCAGCGATATTCCTGAATCTCCGTGGCTGTGGAGGCACAGGGAAACTGAGTGAGGACCTGGGTGGGCTGTATCCCGCAGGCAGCTCTTAGCCTGGGGGGATGGGAGGACGTAGGGGAGTTCCTGGTCCATGCCAGGCTTGGAGGATGAGTGGGAGTCAGGAGGCCATAGGAGGGAGGGCGTTCCAGGCCAACCTGAGAGAGAGCCAGAGCAGAGGAGTTCGGGGGCCTACAAGCGGTGTTGTTTTATTCTGACACCACAGGGACCCAAGGCAGGGTTTAGAGCAGGGTGTGAATGGGGCTCCTACTGCGTGGAGGTCAGGTCCTCCAGCAGGGGAGCCAGCTTTGGCCCTGCCAGCTGCCTTGGTGTGGGAAGGCCCCTGCTTAGGGAGGAGAATGGGCAGGGCTCTGCCGCCACCAGGCTGTGTGACCTCAGGCAGATTCCTGGCCTTTCTGGCCCTCAGTGTCTCCGTCTGCAAAAGGGATACAGTCCTGAGCCTTAAAGTTCTGGGTGCATAGAAGAACTAGTGCGGGGCAGAGAAGGTGTAGCCTTTGGCTTGCTGGACCCAAAGGACCGAAGCCATAATAACCCTTTCTGGTGGCTTGCAG
Seq C2 exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408:ENST00000481355:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=NA C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains