MmuINT0153256 @ mm10
Intron Retention
Gene
ENSMUSG00000026811 | St6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:MGI Symbol;Acc:MGI:1355316]
Coordinates
chr2:32608042-32609316:+
Coord C1 exon
chr2:32608042-32608096
Coord A exon
chr2:32608097-32609225
Coord C2 exon
chr2:32609226-32609316
Length
1129 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq A exon
GTAAGTGTGGACCCGACATTCGCACTGGCACCTGATACGCTGTTCTGACCATGGCGTTCTCAGAGCAGGACCGTGACGGGCCTGACCGGGGGAACCGTAGTCCTGGCTGAGGGCACTGCTCAGGCAAAGGTGGGAAAGTGGGGCGTGGGCCTGGGACCTGGAGTGCTCCAAGTGTCTGGAGCACGGGGCATGCGCAAGACAGGGTAGTAAGACGGTGGTCTGTCTGGGAGCTGTGGCCAGACCCAGGGGAGCTTTGAATGCTGGAGGTGTCAGGGTTAATGGGGGCGACTCTAGGATTCTGGCCTCCTGTCTTCTGACCTAACGGTTTGAGTCCACGGACAAGCCACGCCTCCCTTCCATTAAGCCTGTTTCCTGAACTGCCCGCTGGGGACAGACAGAAGTCTGGGGTCTCTGACTGAAGATACTGGGATGGCACAGGGGAACCATGAAGCCTGGGGATGGTAGTGGGAGCTGCCACGGGGTGGGGTCGTGCTTGGCAATGGGAGGAGCCAGGCCTGGCCAATCAGGAGCGGTGTGTGTGGCACTCTAGCCTGGAGGTTTCTAGCTATTCCTGGAGTAGGAGTAAACCGCAGCTAGGTCAGGGGGCGGAGATAGTGACCGGAGCCGAGAGGCTCCCCGGGGAGCGCGCGCTCTGATCTGGGGATCCCCTTTGAGGATCCAGCCTAGTTTTCTTCCTCTCTATGCCAGCCCTTTTTTGCGTTTTTGGGCTGTAGCTGCCAGAGGAAGTGGGCTGGATGCCCTCTTATGGCCTGCTTACAGGTTGGGGCTTGGAAGTGTAGAAGGGCCAGGCCCAGTGGTGGGAGGGAAGGGAGGGTTATAGAGTGAGGCACACAGCTGGGCGGGGCAGGAAGGCTTGCCCTTGACCCCAAGATCACATTGACCAATGACCGAATTCACTGAGCCCTGGGGTTCAAAGGCCTGTGAGGAGGGTGTCAGGACCTAGGAAACTTTTGGACCATCCCTGCTTGAAGTATGAGTGGGAACCAGGACAAAACAGAAACAGCCCTGAACCTTAAACTTGGGAGAGCTGTTGGGTAGAGGCGCGACCTGAGATCCAGCCGCATCCAGGGGAGGGCCTCCGGCCATAACCCTTTCTGGTGGCTTGCAG
Seq C2 exon
GTGTGACCCCACAACCCTGCCCCCCGGGCCACCTGCCGGACGCTGGCCTCTACCCTTCAGCAGACGCCGGAGAGAGATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026811:ENSMUST00000095044:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types