HsaINT0159878 @ hg19
Intron Retention
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:23364]
Coordinates
chr9:130658521-130660289:-
Coord C1 exon
chr9:130660235-130660289
Coord A exon
chr9:130658612-130660234
Coord C2 exon
chr9:130658521-130658611
Length
1623 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCAGAGAGGTCACATGGCTTGCTCGAGGCCCCCCAGCCA
Seq A exon
GTAAGTGGTGAAACCGGGATTCGCACTGGCAGCTGACATGCTGTACTGACCATGGCCTTCTCAGAGCAGGATTGTGACGGGGCGGACCAGGGGGACGGTGGTCCTGGCTGAGGGCACAGCTCGGGCAAAGGTGGGAAAGTGGGCGGCGGGCAGGGGGCATCCGCAGGAAAGGGTGGCCACGCGTAGTAAGATATAGGCGGCTGGACCCCTGGGCGCCTTGAATGCCAAGGTCTCAGGGCAGATGGGGCCACCCCAGGATTCTGGACTCCTGTCTTTTGCTCTAACGGTCTGTGAGGGCAAGAACAAGCCGCTCCCTGCTTCTGATGAGGCCCCGTTTTCTGCTCTGTACCGCAGGGCCTGGACTAGATAGGAGTCTGGGCCTCCCTGACTGGCAGTGAGGGGCAGCCGCTGGAGAAACCCGAAGCCGAGCTCCGGATGAGGGGCGCTCCCACGGGGAGGGGGCGGGGTTGGAGAGGGGGCGGGGCCATGATCTAACCAATCAGGAGCGAGGTGTGTGTGCCAAGCCTCCTCTGGCCCGAGGTTCTCTGGCTATTCCTGGTGGCCGTGTAGGAGTAAACAGCGGCTAGGTCAAAGGGCTCAGAGAATACAGGAACTGAGAGGCCCCTGGAGCAGGGGACGGAGCTGAGGAGGGCCCCCTAAGCCCCAGTTTCTTCCCTCTGCACTCCTGCCCGCCCTGCCCCCGGCCTGTCTGCTGGAGGTAGGCTGGACACAGTACATTTTCCCTTTCACAGGTGGGGAACCCTGGAAAGGAGCTGGGTTTTGGTTGTGGGAGAGGAAGAGATTGGGGTGTGCGGAGCAGAGCTGGGCCGGCCTCCTCACTGCCAGGTCTTCCAAAGGCCCCCCCAGCCACCCCCTGAGACTGTGATTACAGCCATTTGACAGATGAGGAGTCAGCCCTGGCAGAGACTGTCGAGCCTGGACTAGAACCGAGCCTCTCAGACTTGAGTCTGTGCCCTTAGCCCCCGAGAGATCCTGCTTGTTAATGCACTAATTCATTCAGCGATATTCCTGAATCTCCGTGGCTGTGGAGGCACAGGGAAACTGAGTGAGGACCTGGGTGGGCTGTATCCCGCAGGCAGCTCTTAGCCTGGGGGGATGGGAGGACGTAGGGGAGTTCCTGGTCCATGCCAGGCTTGGAGGATGAGTGGGAGTCAGGAGGCCATAGGAGGGAGGGCGTTCCAGGCCAACCTGAGAGAGAGCCAGAGCAGAGGAGTTCGGGGGCCTACAAGCGGTGTTGTTTTATTCTGACACCACAGGGACCCAAGGCAGGGTTTAGAGCAGGGTGTGAATGGGGCTCCTACTGCGTGGAGGTCAGGTCCTCCAGCAGGGGAGCCAGCTTTGGCCCTGCCAGCTGCCTTGGTGTGGGAAGGCCCCTGCTTAGGGAGGAGAATGGGCAGGGCTCTGCCGCCACCAGGCTGTGTGACCTCAGGCAGATTCCTGGCCTTTCTGGCCCTCAGTGTCTCCGTCTGCAAAAGGGATACAGTCCTGAGCCTTAAAGTTCTGGGTGCATAGAAGAACTAGTGCGGGGCAGAGAAGGTGTAGCCTTTGGCTTGCTGGACCCAAAGGACCGAAGCCATAATAACCCTTTCTGGTGGCTTGCAG
Seq C2 exon
GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-ST6GALNAC6:NM_013443:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)