BtaINT0141692 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98577315-98579039:-
Coord C1 exon
chr11:98579014-98579039
Coord A exon
chr11:98577403-98579013
Coord C2 exon
chr11:98577315-98577402
Length
1611 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ATCCTTTCTGTGGCTTGCAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGCTTGCCCGAGGCCCCTCAGCCA
Seq A exon
GTAAGTGGAGGAACCCGGATTTGCAGTTGAACCTGAGATGCTGTACTGACCATGGCCTTCTCAGAGCAGGACTGTGACGGGGGCTGACCAAGGGGACAGTGGTCCTGGCTGAGGGCACTGCTCAGGCAAAGGTGGGAAAGTCGGGGGGCGGGTCTGGGAACAGGAGTGTTCTAGGGTGTCTGGAGCTTGGGGCATCCGAAGGAAAGCGTAGTGAGAGGGGAGGCTCAGCTCAGAGAAGCAGCTGGAATGCTAGAGGCCTCAGGGTGGATGGGGGCTACCCAGGGATCCTGGATAACTTTTGCATTAGTGGGCTGTGAGTCTAACAACAAGCCGCTCTTCCCTTCCGTTGAACCTCAGTCTCCTGATCTGTGCATCCGGCGGGACTGGACCTGGTGAGAGTCCCCATGAGTCCCGACTGGGGTGGCTTTGAAGGCCGGCTGCGGCGAAACCTGAAACACGGCTTGGGAGGAGGGGGCGCCTGCGGAGAGAAGGCGGGGTTGGGTGGTGGGCGGAGTTAGGACCCAACCAGTCAGGAGCTGAGTGGGGACACCTCCTTTGGCCTGGCTATGCCTGATAGCGGTGTAGGAGTAAACAGCTGCTAGGTCAGGGGGCGGAGATAGTGGCGGGAGCTGGGAGGCCCCTGGAGGGAAGCTTCGACCGAGCTGGGGGAGCCCCAGGGCCCCTTTCTTTGCGCACTCACTTTCCGTGTCTTCTGGCCTAATCTGCTGGAGGTGGCTGGACACAAGTACTGACTCCCTTTTGAAAGGTGGGGAAATTGAAAACTGCAGAGAAGCTGCGTCCTGCGACGATGGGGGCGGGGTGGGGGGCGTCTGTTGGAGAGTGAGGAGCAGAGTGTGTATGGTTCCCTGAGACCCTCTCCCCCCTCACCAGGGTGGAGCTGTGGTTATGCCCATTGGATAGATGAGTCTGAACCCTTAACCCCCAAGATCTTATGTAATAATGAACAAAGTCAAAACCAAGGGAAAGCAAGTTAAGAATGGAATCACTCAGTGGACCTCCTGCACATCTCCAGGGCCCTGGAGGCACAGCAGAGAATGGGAGTGAGGCCCTGGGCCAGCTGTGCCATCAGAACTCTCTGCTGGAAGGTGGCATGCAGGGGACATTCCTGGCCCACCCCAGGTGGGAGGATGAGTGGGCATGATCAGGGTTGTGCAGAGTGTTCCAGTTGGAGGGGCCAGTTTATGCAAGACCTGGAAGGGTGTGAGTGTTGAGGAGTTTGGGGACCTACAAGGAATGTTGCTTTCTTCCCAGGCTTCGGGACCATAAGGCAAGGTTTAGAGTAGAGGTACGAATAGGGCTCCTGCTAGGTGAGGAGCAGCAACCCCCCACCCCAGCCGGGAAGCCAGCCTTTGGCCTGCAAACTGCCTTTGGCACAGAGTGGGAGAGAGAACGGCAGGGAGAGAGGCAGGGCTCTGCCACCACCTGGCTGTATGACTTCTGACCAATTCCTGCCCTTTGTCGGCTTCAGTGTCTCCATCTGGAAAATGGGTACAGCCCTGAGCCTTGGGGTCATGGGTGGATAGAACTGGCGGGAGTGGGGAGGGTGTCGCTTAGGACCAGCTGGACCATAATCCTTTCTGTGGCTTGCAG
Seq C2 exon
GTGTGACCACACACCCCTACCTGGGCCACCTGCAGGACACTGGCCCCTGCCCCTCAGCAGACGCCGGAGAGAGATGAAGAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129:ENSBTAT00000061027:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development