MmuEX6100215 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30049574-30061367:-
Coord C1 exon
chr2:30061153-30061367
Coord A exon
chr2:30053477-30053679
Coord C2 exon
chr2:30049574-30049632
Length
203 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTGTTGTTGTTAGAAC
3' ss Score
4.76
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCAAATGCTTGGGGATCCTAGGCTGTCGCCCAGTCTTTAAAGGGCACACAGAGCTTCGCACTGCTTCTGACAGTTCTCTTGAGCTAAGCTGCATCTGGGCGGAAGTAGCCCATCTAGGGCTCGGCCTCTTTAAAGGAACAGACTTCTGCAACCTTGGGAATACGTTTGGGGTCGCGGGTTATTGGACAGAGCAGCGCTATTGTTTGCTGAAGCAG
Seq A exon
AACTGTGTGTGGGACTCAGGCCCTGGCTTGGAGCCATTTTCTGGCCTAGACTGTCTGCCCTTCTGTGCCCCTGAGGGGACGTCTGCAGTGCCTTGGATCTGGGAGGCATGTTCAGGAGTGCAGCAGGCCTCTCGGTGCACCTGCTGTGACCACTCTGGGGAAGGAAGGCTGGAGCCTCACGCAGCCAGTGCTTGCACCAGTCT
Seq C2 exon
CTCACCATGTCCAAACAGCTGCAGGCTCGAAGGCTGGAAGGGATCGATCACAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'1-5,'1-1,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTGGGGATCCTAGGCT
R:
GGGTTGTGATCGATCCCTTCC
Band lengths:
268-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: