RnoEX0047936 @ rn6
Exon Skipping
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8762794-8785756:-
Coord C1 exon
chr3:8785042-8785756
Coord A exon
chr3:8766338-8766546
Coord C2 exon
chr3:8762794-8762852
Length
209 bp
Sequences
Splice sites
3' ss Seq
GTTGCTGTTGTTGTTGTTAGAAC
3' ss Score
4.83
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTGCCAGGACAAGTGCAGCCTGGGGACCGTGGCGGAAACTCAAGTGAAAGGCACGCACGGAAGCCGGGCGCGCGTGATTGGGTTCAGTGAGGTGACAGCGCGCGTCCCTTTTTATACTCGACCCACTCAACAAGGCCCGCCGCTCTCGGCCGCCACGCAGGCAGCCCTAGTCCTGTTTCTGGCTACCCACAGCCAGTCGCGCCGTGGGTCTTTGGCGCCTTGTTTTGTCTGTCACGGTACCGCTTCTTAGGTCTCCGCCCCGGAAGTGATATCACCGAGCGCAAACCCGGGGGTCCCTAAGGCTGCCCCCCCCCCCCCCCGGCGTCTTTAAAGGGAACTCGCAGCTTTGCACTGACAGTGCTCTTGAGCCAAGTTGCTTCTGGGCGGAAGTAGTCCATCTAGGGCTCGGCCTCTTTAAAGAAACAGACTTCTGCAACCTTGGGACTACGTTTGGGGTCGCCGGCTATTGGACGGAGCAGCGCAATTGTTAGCTGAAGCAG
Seq A exon
AACTGTGTGTGGGACTCAGGCCCTGGCTTGGAGCCATTTTCTGGGCTAGGCTGTCTGCCCTTCTGTCCCTCTGGAGGGGAAGCCTGCAGTGCCTGTGGACCTACCTCAGAGGCATGTTCAGGAGTGCAGCAGCCCTCTCGGTGCACCTGATGTGGCCACTCTGGGGAAGGAAAGCTGGAGCCTCACTCACCCGGTGCTTGCACCAGTCT
Seq C2 exon
CTCACCATGACCAAACGGCTGCAGGCTCGGAGGCTGGACGGGATTGATCAAAACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTCTGTCACGGTACCGC
R:
CAGCCGTTTGGTCATGGTGAG
Band lengths:
299-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]