RnoEX0047935 @ rn6
Exon Skipping
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8762794-8785756:-
Coord C1 exon
chr3:8785042-8785756
Coord A exon
chr3:8782789-8782942
Coord C2 exon
chr3:8762794-8762852
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTTATGTCTGCCCAGGGA
3' ss Score
6.65
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGCCAGGACAAGTGCAGCCTGGGGACCGTGGCGGAAACTCAAGTGAAAGGCACGCACGGAAGCCGGGCGCGCGTGATTGGGTTCAGTGAGGTGACAGCGCGCGTCCCTTTTTATACTCGACCCACTCAACAAGGCCCGCCGCTCTCGGCCGCCACGCAGGCAGCCCTAGTCCTGTTTCTGGCTACCCACAGCCAGTCGCGCCGTGGGTCTTTGGCGCCTTGTTTTGTCTGTCACGGTACCGCTTCTTAGGTCTCCGCCCCGGAAGTGATATCACCGAGCGCAAACCCGGGGGTCCCTAAGGCTGCCCCCCCCCCCCCCCGGCGTCTTTAAAGGGAACTCGCAGCTTTGCACTGACAGTGCTCTTGAGCCAAGTTGCTTCTGGGCGGAAGTAGTCCATCTAGGGCTCGGCCTCTTTAAAGAAACAGACTTCTGCAACCTTGGGACTACGTTTGGGGTCGCCGGCTATTGGACGGAGCAGCGCAATTGTTAGCTGAAGCAG
Seq A exon
GGAGTGAGTGTTCAGTTTCGGTTCAGCATCTTATGGAGGGAACAAGGAACAAACTGCCTGCTATTTGTTACACCTGAGGCTGATGCTGATCCCTGTGGACTGGGAACCTTCAGTCAGAGCTGCAGAAGCCACTTTGTTCTCAGCCCATTCCAAG
Seq C2 exon
CTCACCATGACCAAACGGCTGCAGGCTCGGAGGCTGGACGGGATTGATCAAAACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097_MULTIEX1-1/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCACCGAGCGCAAACC
R:
CAGCCGTTTGGTCATGGTGAG
Band lengths:
255-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]