HsaEX0012837 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131608959-131644315:-
Coord C1 exon
chr9:131644176-131644315
Coord A exon
chr9:131609712-131609922
Coord C2 exon
chr9:131608959-131609138
Length
211 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTGTTATTGTTAGAGC
3' ss Score
4.24
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTTCGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG
Seq A exon
AGCTGTGTGTGGGGGACCCAAGTCCTGAGCTCGGAGGCATTTTCTGGCCAGGGCTGTTTCCTCCCTTCTCCCCTGCCTCTGGAAAAGTCTGCAGTGCCCCAAGGCTCTGGGAGGCATGTTCAGGACTGCAGCAGCCATCTCTGTGCACCTGGTGGGGCCCCTTCAGGGAAGGAAGGCTGGAGCCCCACTCACTTGGTTCTTGCACCAGACT
Seq C2 exon
CAGGTGGCTGAGAAGAATGTTGGATCCCCAGCTCCACGGCCCACCAGCCATCTGGGACTGGCAAACCCACAGGAACGGAAGGTTCCTCAGGGACCACAAAGCCCATGTGAGGTCCCTGCTGCTGAAGGGATTCTGAGGACAGGAGGAGCCAAATTACCTATCCAGGGTCACCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'2-9,'2-8,5-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCGGGGCGGAAGTAG
R:
CCCTGGATAGGTAATTTGGCTCC
Band lengths:
278-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)