HsaEX0012839 @ hg19
Exon Skipping
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131607632-131609922:-
Coord C1 exon
chr9:131609712-131609922
Coord A exon
chr9:131608959-131609138
Coord C2 exon
chr9:131607632-131607690
Length
180 bp
Sequences
Splice sites
3' ss Seq
GGGTTCACTATTGACCACAGCAG
3' ss Score
1.09
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGCTGTGTGTGGGGGACCCAAGTCCTGAGCTCGGAGGCATTTTCTGGCCAGGGCTGTTTCCTCCCTTCTCCCCTGCCTCTGGAAAAGTCTGCAGTGCCCCAAGGCTCTGGGAGGCATGTTCAGGACTGCAGCAGCCATCTCTGTGCACCTGGTGGGGCCCCTTCAGGGAAGGAAGGCTGGAGCCCCACTCACTTGGTTCTTGCACCAGACT
Seq A exon
CAGGTGGCTGAGAAGAATGTTGGATCCCCAGCTCCACGGCCCACCAGCCATCTGGGACTGGCAAACCCACAGGAACGGAAGGTTCCTCAGGGACCACAAAGCCCATGTGAGGTCCCTGCTGCTGAAGGGATTCTGAGGACAGGAGGAGCCAAATTACCTATCCAGGGTCACCCAGCCAAG
Seq C2 exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'5-13,'5-9,6-13
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTCGGAGGCATTTTCTG
R:
GGGTTGTAGTCGATCCCGTCT
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)