HsaALTA0001534-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131607632-131644315:-
Coord C1 exon
chr9:131644176-131644315
Coord A exon
NA
Coord C2 exon
chr9:131607632-131607690
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTCCACTTGTTCGTCTCCAGCTC
3' ss Score
8.67
Exon sequences
Seq C1 exon
CCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTTCGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG
Seq A exon
NA
Seq C2 exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-2-13,2-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCGGGGCGGAAGTAG
R:
CAGGGGTTGTAGTCGATCCC
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)