BtaALTA0005836-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000036101 | CCBL1
Description
Bos taurus cysteine conjugate-beta lyase, cytoplasmic (CCBL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001077978]
Coordinates
chr11:99367166-99382718:-
Coord C1 exon
chr11:99382593-99382718
Coord A exon
NA
Coord C2 exon
chr11:99367166-99367224
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
GCTTGCTCTGTTGTCTCCAGCTC
3' ss Score
8.7
Exon sequences
Seq C1 exon
AAAAAGAGGAGAAAAAGAAGTGGAAGGATCTCAAGATGACAAAGAAACTGGAGCGGCAGCGAGCGCAGGAGGAACAGGCAAAGCGCCAACAGGAGGAAGAGGCAGCTGCCCAGAGCGAGGATCGGG
Seq A exon
NA
Seq C2 exon
CTCACCATGGCTAAACGGCTGCAGGCTCGAAGGCTGGACGGGATCGACCACAACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000036101-5-11,5-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAAAGAAACTGGAGCGGC
R:
CAGCCGTTTAGCCATGGTGAG
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development