HsaALTA0001534-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128845353-128882036:-
Coord C1 exon
chr9:128881897-128882036
Coord A exon
NA
Coord C2 exon
chr9:128845353-128845411
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTCCACTTGTTCGTCTCCAGCTC
3' ss Score
8.67
Exon sequences
Seq C1 exon
CCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTTCGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG
Seq A exon
NA
Seq C2 exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-1-19,1-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCGGGGCGGAAGTAG
R:
CAGGGGTTGTAGTCGATCCC
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains